RemoteSlurmServer.run script


def run_script(self, script, files=[], conda_env=None, trial_run=False)

Run a script on the server in the conda_env, and wait for it to complete.

The files are copied and executed in RemoteSlurmServer.directory directly (whereas RemoteSlurmJob scripts are executed in subdirectories).

This is useful for short installation/setup scripts that do not belong in the scheduled job.

The resulting script and files are copied to RemoteSlurmServer.directory on the remote server and then script is executed via ssh.

Arguments

script (string or list): shell script to run on the remote server, including any necessary installation steps. Note that the script can call any other scripts in files. If a string, must be the path of a valid file which will be copied to the server. If a list, must be a list of commands (i.e. a newline will be placed between each item in the list and sent as a single script to the server).
files (list, optional, default=[]): list of paths to additional files to copy to the server required in order to successfully execute script.
conda_env (string or None, optional, default=None): name of the conda environment to run the script or False to not use a conda environment. If not passed or None, will default to 'default' if conda is installed on the server or to False otherwise.
trial_run (bool, optional, default=False): if True, the commands that would be sent to the server are returned but not executed.